RELION¶

Compute Resources

Have questions or need help with compute, including activation or issues? Follow this link.
User Agreement

Docker Usage

The information contained on this page assumes that you have a knowledge base of using Docker to create images and push them to a repository for use. If you need to review that information, please see the links below.
Docker and the RIS Compute Service
Docker Basics: Building, Tagging, & Pushing A Custom Docker Image

Image Details ¶

Docker image hosted at ghcr.io/washu-it-ris/relion.
Software Included:
- Relion (https://www3.mrc-lmb.cam.ac.uk/relion//index.php/Main_Page)
- CTFFIND (https://grigoriefflab.umassmed.edu/ctffind4)
- GCTF (hhttps://www2.mrc-lmb.cam.ac.uk/research/locally-developed-software/zhang-software/)
- MotionCor2 (https://emcore.ucsf.edu/ucsf-motioncor2)

Interactions GUI sessions are done via the Custom noVNC Image application in Open On Demand (OOD).
You can find out more about OOD here: Compute Quick Start.
There are two fields beyond the basics that will need information specific to this image.
- Environment Variables
- Docker Image

PASSWORD=password

gcr.io/ris-registry-shared/relion:<tag>

Fill out the rest of the fields with the appropriate information (explained in the quick start).
Launch the job through the methods described in the quick start.
Once in an interactive relion session using the following command:

relion

Earlier versions are still available but no longer directly supported by RIS. Please refer to the latest version for direct support.